diff --git a/arch/x86/kernel/apic/msi.c b/arch/x86/kernel/apic/msi.c
index a20873bbbed6..f86e10b1d99c 100644
--- a/arch/x86/kernel/apic/msi.c
+++ b/arch/x86/kernel/apic/msi.c
@@ -86,11 +86,13 @@ msi_set_affinity(struct irq_data *irqd, const struct cpumask *mask, bool force)
 	 *   The quirk bit is not set in this case.
 	 * - The new vector is the same as the old vector
 	 * - The old vector is MANAGED_IRQ_SHUTDOWN_VECTOR (interrupt starts up)
+	 * - The interrupt is not yet started up
 	 * - The new destination CPU is the same as the old destination CPU
 	 */
 	if (!irqd_msi_nomask_quirk(irqd) ||
 	    cfg->vector == old_cfg.vector ||
 	    old_cfg.vector == MANAGED_IRQ_SHUTDOWN_VECTOR ||
+	    !irqd_is_started(irqd) ||
 	    cfg->dest_apicid == old_cfg.dest_apicid) {
 		irq_msi_update_msg(irqd, cfg);
 		return ret;
@@ -178,7 +180,8 @@ static struct irq_chip pci_msi_controller = {
 	.irq_retrigger		= irq_chip_retrigger_hierarchy,
 	.irq_compose_msi_msg	= irq_msi_compose_msg,
 	.irq_set_affinity	= msi_set_affinity,
-	.flags			= IRQCHIP_SKIP_SET_WAKE,
+	.flags			= IRQCHIP_SKIP_SET_WAKE |
+				  IRQCHIP_AFFINITY_PRE_STARTUP,
 };
 
 int native_setup_msi_irqs(struct pci_dev *dev, int nvec, int type)
@@ -279,7 +282,8 @@ static struct irq_chip pci_msi_ir_controller = {
 	.irq_ack		= irq_chip_ack_parent,
 	.irq_retrigger		= irq_chip_retrigger_hierarchy,
 	.irq_set_vcpu_affinity	= irq_chip_set_vcpu_affinity_parent,
-	.flags			= IRQCHIP_SKIP_SET_WAKE,
+	.flags			= IRQCHIP_SKIP_SET_WAKE |
+				  IRQCHIP_AFFINITY_PRE_STARTUP,
 };
 
 static struct msi_domain_info pci_msi_ir_domain_info = {
@@ -322,7 +326,8 @@ static struct irq_chip dmar_msi_controller = {
 	.irq_retrigger		= irq_chip_retrigger_hierarchy,
 	.irq_compose_msi_msg	= irq_msi_compose_msg,
 	.irq_write_msi_msg	= dmar_msi_write_msg,
-	.flags			= IRQCHIP_SKIP_SET_WAKE,
+	.flags			= IRQCHIP_SKIP_SET_WAKE |
+				  IRQCHIP_AFFINITY_PRE_STARTUP,
 };
 
 static irq_hw_number_t dmar_msi_get_hwirq(struct msi_domain_info *info,
@@ -420,7 +425,7 @@ static struct irq_chip hpet_msi_controller __ro_after_init = {
 	.irq_retrigger = irq_chip_retrigger_hierarchy,
 	.irq_compose_msi_msg = irq_msi_compose_msg,
 	.irq_write_msi_msg = hpet_msi_write_msg,
-	.flags = IRQCHIP_SKIP_SET_WAKE,
+	.flags = IRQCHIP_SKIP_SET_WAKE | IRQCHIP_AFFINITY_PRE_STARTUP,
 };
 
 static irq_hw_number_t hpet_msi_get_hwirq(struct msi_domain_info *info,